Inherited immune disorders

IL7R-deficient SCID

Also called IL7R-deficient severe combined immunodeficiency

If you or someone you love has just heard this diagnosis, start here. This guide explains what the condition is, how it is usually treated and where a transplant fits.

IL7R-deficient SCID is an inherited condition in which a baby cannot make T cells, the white blood cells that lead the immune response. It affects girls and boys. Without treatment it is life-threatening in early childhood. A donor stem cell transplant, ideally in the first months of life, is the established treatment.

Other names and abbreviations

IL7R-SCID, IL7RA deficiency, CD127 deficiency, T-B+NK+ SCID, SCID, severe combined immunodeficiency, primary immunodeficiency, T-B+ severe combined immunodeficiency due to IL-7 receptor alpha deficiency, Interleukin-7 receptor alpha deficiency

In short

  • IL7R-deficient SCID is an inherited disorder that stops T cells from developing normally. This leaves a child open to serious infections.
  • While a transplant is arranged, children may need medicines to prevent infection and treatment for active infections. They may also need antibody (immunoglobulin) support.
  • A stem cell transplant can supply cells that grow into working T cells. The donor can be related or unrelated.
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Underlined words open a short explanation. See all terms

Where transplant fits

can provide cells that develop into functional . A suitable related or unrelated donor may be used; and the expected pattern of immune recovery depend on the individual case.

Treatment depends on the exact diagnosis, disease stage, prior treatment and the person’s health.

Some patients need a donor who is not a relative.

See if you can join

Key facts

Who it affects
Usually detected in infancy or through newborn screening; both sexes can be affected.
How common
SCID of any type affects about 1 in 58,000 newborns; 6 of the 52 babies with SCID (about 12%) had IL7R deficiency3,030,083 newborns screened in 10 U.S. states and the Navajo Nation, 2008–2013 Source: How common
How it is passed on
Autosomal recessive: a child is affected when both parents pass on a changed gene.
Cells used in a transplant
When transplantation is appropriate, the graft contains blood-forming stem cells from a suitable donor. Bone marrow, peripheral blood or cord blood may be selected according to the condition and transplant protocol.
Where a donor fits
Donor transplant option

The condition

What it is

SCID stands for severe combined immunodeficiency. It is a group of rare genetic conditions in which a baby is born without a working immune system. IL7R deficiency is the fourth most common type, according to the Immune Deficiency Foundation. It causes about 1 in 10 cases.

Babies with IL7R-deficient SCID have few or no T cells. Unlike some other types, they have normal or even high numbers of , which make , and natural killer (NK) cells, which attack virus-infected cells. Doctors call this pattern T-B+NK+ SCID.

Normal numbers of some immune cells can be misleading. Without T cells to guide them, B cells cannot make useful antibodies, so the baby is still at risk of severe infection. Some changes in the IL7R gene cause a rare, overactive immune state called Omenn syndrome instead of typical SCID.

Where IL7R-deficient SCID starts in the bloodIL7R-related SCID stops normal T-cell development; B cells and natural-killer cells are typically present, but without effective T-cell immunity a child is vulnerable to serious infection.Simplified illustration.

Marked as affected: T cells.

  • Blood stem cell, In the bone marrow
    • Myeloid line
      • Red blood cells
      • Platelets
      • Granulocytes
      • Monocytes
    • Lymphoid line
      • B cells
        • Plasma cells, Develop from B cells
      • T cells, Affected
      • NK cells, Natural killer cells

What causes it

IL7R-deficient SCID is caused by changes in the IL7R gene. This gene makes one part of the receptor for interleukin 7 (IL-7), a signal that young immune cells need to develop. Without that signal, T cells cannot form normally.

The condition is autosomal recessive. A child is affected only when both copies of the gene have a change, one from each parent. Parents who carry one changed copy usually have no symptoms. When both parents are , each pregnancy has a 1 in 4 chance of an affected child, a 1 in 2 chance of a carrier child and a 1 in 4 chance of a child with neither change.

Once the family’s gene changes are known, relatives can have carrier testing and a pregnancy can be tested before birth. A genetic counselor can explain what the results mean for brothers, sisters and future children.

How it can be inheritedIn autosomal recessive inheritance, a child is affected only when they inherit a changed copy of the gene from each parent.Simplified illustration.
Parents
  • Parent: Carrier: one changed copy, not affected
  • Parent: Carrier: one changed copy, not affected
Each child
  • 1 in 4: Affected, Two changed copies
  • 2 in 4: Carrier, One changed copy, like the parents
  • 1 in 4: Neither affected nor a carrier, Two working copies

The chances are the same for each pregnancy.

A child is affected after inheriting a changed copy of the gene from each parent.

  • Changed copy of the gene
  • Working copy

Symptoms and effects

Babies look healthy at birth. Without treatment, symptoms start in infancy. They include infections that keep coming back, fever, ongoing diarrhea, skin inflammation and poor weight gain and growth.

In the United States, for SCID reached every state by the end of 2018. A heel-prick blood test called TREC checks for signs that the baby is making new T cells, so babies with IL7R-deficient SCID can be found before they get sick. Where screening is not available, the condition is usually found only after serious infections begin.

An abnormal screen is not a diagnosis, but it needs urgent attention from an immunology team. Blood tests count each kind of immune cell, and genetic testing confirms the cause. Speed matters: in a large study in the United States and Canada, babies who had an active infection when they were transplanted were less likely to survive.

Diagnosis and treatment

How IL7R-deficient SCID is diagnosed

In the United States, most babies with SCID, including this type, are now flagged by newborn screening. The TREC heel-prick test looks for signs that a baby is making new T cells. IL7R is one of the 7 genes most often found behind SCID picked up by screening in North America. An abnormal screen leads to an urgent visit with an immunology team.

Blood tests confirm SCID. Flow cytometry, a test that sorts and counts cells, measures T cells, B cells and natural killer (NK) cells. Another blood test checks whether the T cells work. In IL7R-deficient SCID, T cells are very low or missing, while B cells and NK cells are present, often in normal numbers: the T-B+NK+ pattern. Changes in several other genes can cause the same pattern, so a genetic test is needed.

The genetic test looks for a change in both copies of the IL7R gene. Results can take weeks or months, so steps to protect the baby from germs start right away. Doctors sometimes repeat the cell counts over time to watch for trends.

Low T cells on a newborn screen can have causes other than SCID, so follow-up tests are needed to confirm the diagnosis.

How it is treated

From the moment SCID is suspected, the goal is to keep the baby free of infection until a lasting treatment. Care usually includes medicines to prevent infections, including a dangerous pneumonia called Pneumocystis pneumonia, and regular antibody replacement called immunoglobulin, made from donated plasma. Babies with SCID are not given live vaccines, such as the rotavirus vaccine, and any blood they receive is first treated with radiation and chosen to be free of CMV, a common virus. Breastfeeding is discussed with the team, because breast milk can pass on CMV.

A donor is the established treatment. The donor’s settle in the child and make new T cells, giving the child a working immune system. Results are best when the transplant happens early, before serious infections.

In this type of SCID, the gene change does not directly affect the child’s own B cells. Once donor T cells are in place, those B cells may be able to make useful antibodies. Even so, the team decides case by case whether to give conditioning first: donor cells that also settle in the may give more complete, longer-lasting immunity, but conditioning adds side effects now and possible effects on growth, hormones and organs later. There is no approved for IL7R-deficient SCID.

About these numbers. Each one says which group of people it comes from, and the place and years where the source gives them. It describes what happened across that group, not what will happen to any one person. And a figure measured among people who had a transplant is not the same as the number of people who need one.

How IL7R-deficient SCID can be treatedInfection prevention protects the baby until a donor transplant, which supplies cells that grow into working T cells.Simplified illustration.

Kinds of treatment described for IL7R-deficient SCID: supportive care and a donor stem cell transplant.

After diagnosis, the options described here

  • Supportive care

    Medicines to prevent infection and antibody support protect the baby while a transplant is arranged.

  • Donor stem cell transplant

    A donor stem cell transplant is the established treatment, with the best results when it happens early.

    What a transplant involves

These are the kinds of treatment this page describes, not a plan. Which ones fit, in what order and whether they are combined differs from person to person.

When transplant specialists are usually consulted

NMDP and ASTCT guidelines call for a transplant consultation for SCID at diagnosis, or as soon as newborn screening finds it. If a donor transplant may be needed, they advise of the baby and family, and a first search of the NMDP Registry, at diagnosis.

Read the guidance

What a transplant involves

What a transplant involvesTiming and details differ by person and transplant center.Simplified illustration.
  1. Step 1

    : Finding a donor

    Relatives are tested first to see whether their tissue type (HLA) matches. If none match, the team searches donor registries and cord blood banks.

  2. Step 2

    : Conditioning

    Chemotherapy, sometimes with radiation, prepares the body for the new cells.

  3. Step 3

    : Transplant day, Day 0

    The donor’s cells are given through a vein, like a transfusion.

  4. Step 4

    : Engraftment

    The new cells settle in the marrow and start making blood cells, usually within weeks.

  5. Step 5

    : Recovery

    The immune system rebuilds over months. The team watches for infection, graft-versus-host disease (donor immune cells attacking the body) and relapse.

A transplant, step by step

Daily life and the donor’s role

Living with the condition

The weeks between diagnosis and transplant can be frightening. Families are usually asked to keep the baby at home or in hospital, away from crowds, daycare and anyone who is sick, even with a cold. Brothers and sisters who go to school or daycare can bring germs home, so daily routines often change for the whole family.

Treatment means a stay at a specialist children’s hospital, sometimes far from home. Afterward, checkups continue for years to see how well the donor cells have taken hold and how the child is growing. Preventive medicines and antibody replacement are stopped only when the new immune system is working well. Vaccines are given after that, on the team’s schedule.

Because the condition is recessive, parents may also face decisions about testing their other children and planning future pregnancies. Talking with other SCID families, a genetic counselor and the hospital’s social workers can help with the stress, the isolation and the practical costs.

The donor’s role

A transplant for IL7R-deficient SCID uses blood-forming stem cells from a donor. A brother or sister who is a full is the first choice. But each full sibling has only about a 1 in 4 chance of being a match, and siblings are also checked to make sure they do not have the condition themselves. Many children do not have a matched sibling.

Without one, teams look for a fully matched unrelated donor through the registries. If that search would take too long for the baby’s safety, or no match exists, a family member, usually a parent (a haploidentical donor), or a is used instead. In a large study in the United States and Canada, survival was high with every donor type when babies were transplanted young or before infections set in.

This is why registry volunteers matter for SCID, and why speed matters. A matched volunteer who is ready to donate quickly can make an unrelated transplant possible while a baby waits in protective isolation. Joining a registry cannot promise a match for any one child, and many children are treated with a parent’s cells instead.

Where transplant cells come fromWhich source a team considers depends on the condition, the person and who is available.Simplified illustration.

Highlighted here: a relative, an unrelated volunteer and donated cord blood.

  • The person’s own cells

    Autologous transplant, no donor

    Collected from the person before treatment, then given back.

  • A relative

    Donor transplant (allogeneic)

    A brother or sister may be a full match. Parents and children can be half-matched donors.

  • An unrelated volunteer

    Donor transplant (allogeneic)

    Found through a donor registry.

  • Donated cord blood

    Donor transplant (allogeneic)

    Collected from a baby’s umbilical cord after birth and stored in a public bank.

Some patients rely on a volunteer donor they have never met. Joining your country’s registry could make you that person for someone.

Join the registry

Finding a donor and the outlook

How a donor is found

When a transplant from a donor is planned, the team usually tests brothers and sisters first. Each full sibling has about a one in four chance of being a full match.

Most patients do not have a matched relative. In the words of NMDP, the U.S. registry, “75% of patients don’t have a fully matched donor in their own family.” The team then searches registries of volunteer donors around the world and banks of donated cord blood. In some transplants, a half-matched parent, child or sibling can also be the donor.

What a match meansDoctors compare tissue-type markers called HLA. Each person has two copies of each HLA gene, one from each parent.Simplified illustration.
  • 8 of 8

    All eight markers match. Doctors call this a full match.

    8 of 8: the donor matches the patient at all eight markers, two each for HLA-A, HLA-B, HLA-C and HLA-DRB1.

  • 7 of 8

    One marker differs. Some transplants use a donor like this.

    7 of 8: the donor matches at seven of the eight markers. One HLA-C marker differs.

  • Half-matched

    One set, inherited together from one parent, matches. The rest may or may not.

    Half-matched: the donor matches the four markers the patient inherited from one parent. The other four may or may not match.

  • Matches
  • Differs
  • May or may not match
  • Top row: from one parent. Bottom row: from the other.
  • DR means HLA-DRB1

Doctors can look at up to 12 HLA markers, and usually aim to match 8 to 10 of them. This drawing shows the 8 that transplant guidelines count, and it reads each one as simply matching or not.

Matching depends on inherited tissue markers called HLA, so a patient is most likely to match someone who shares their ancestry. Every person who joins makes the search a little more likely to succeed, especially for patients from groups that are underrepresented on registries.

Looking ahead

Outlook for IL7R-deficient SCID

Without a transplant, IL7R-deficient SCID is life-threatening. With early treatment, most children now survive. In large North American studies of SCID, two things mattered a great deal: how young the baby was at transplant and whether the baby had an active infection at the time.

Survival also differs by type of SCID. In a study of 902 children with SCID at 34 centers in the United States and Canada, survival in the group that included IL7R deficiency (along with CD3 and CD45 types) was not clearly different from the X-linked group. Some other types, such as ADA deficiency and the DNA-repair types, had lower survival.

Follow-up is lifelong. Regular blood tests check that the new immune system stays healthy.

About these numbers. They describe groups of people, not what will happen to any one person.

These are results for groups of treated children. They cannot predict how one child will do.

Common questions

Is IL7R-deficient SCID curable?

Often, yes. NMDP calls transplant the only known cure for SCID. Donor stem cells grow into working T cells and give the child a working immune system. Results are best when the baby is transplanted young and before serious infections. In one U.S. newborn screening study, all six babies found with IL7R SCID were alive with donor cells in place at follow-up. There is no FDA-approved gene therapy for any form of SCID.

What does T-B+NK+ SCID mean?

It describes which immune cells a baby has. T cells are missing (T-), while B cells (B+) and natural killer cells (NK+) are present. IL7R deficiency is one cause of this pattern. Changes in a few other genes, such as those for parts of the CD3 complex or for CD45, can cause it too. Having B cells is not enough for protection, because B cells need T cells to make useful antibodies.

How is IL7R-deficient SCID inherited?

It is autosomal recessive. A child is affected when both copies of the IL7R gene have a change, one from each parent. Parents who carry one changed copy are usually healthy. When both parents are carriers, each pregnancy has a 1 in 4 chance of an affected child. Unlike X-linked SCID, both girls and boys can be affected. Once the family's changes are known, relatives can have carrier testing.

Does newborn screening find IL7R-deficient SCID?

Yes, usually. The TREC newborn screen looks for signs that a baby is making new T cells, and babies with IL7R SCID make very few. Every U.S. state screens for SCID. A positive screen is not a diagnosis. It leads to urgent blood tests and genetic testing to confirm the type. In places without screening, babies are often found only after serious infections begin, which makes transplant riskier.

Does a baby with IL7R SCID need chemotherapy before transplant?

Not always. The team decides case by case. European transplant guidelines note that B cells are not directly affected in this type of SCID. So donor cells may not need to settle in the marrow for the child's own B cells to work. A transplant without conditioning (medicines that clear space in the marrow) is possible. The same guidelines note that when donor cells do settle in the marrow, overall immune function may be better in the long run.

Why the details matter

A standard SCID transplant plan does not suit every genetic type of SCID, so the approach is chosen with the gene in mind.

For your next appointment

IL7R-deficient SCID

From the Jada Bascom Foundation disease library, jadabascomfoundation.org. Printed .

Questions to bring to your care team

  • Has genetic testing confirmed changes in both copies of IL7R, and is this typical SCID or Omenn syndrome?
  • Should our other children be tested, and can a brother or sister who carries one changed copy be a donor?
  • Do you plan conditioning before transplant, and what long-term effects should we watch for?
  • How long might an unrelated-donor search take, and what is the plan if no matched volunteer is found in time?
  • What is the goal of each treatment you are suggesting?
  • Is a transplant being considered? Why now, or why not yet?
  • Where can our family find support during treatment?

A one-page list to take to the next appointment, with room for notes.

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Sources and further reading

  1. Guidelines for hematopoietic stem cell transplantation for inborn errors of immunity
    EBMT / ESID Inborn Errors Working Party, 2021
  2. Inborn Errors of Immunity
    EBMT Handbook, 2024-04-11
  3. T-B+ severe combined immunodeficiency due to IL-7Ralpha deficiency
    NIH Genetic and Rare Diseases Information Center (GARD), 2026-06
  4. IL7R gene
    MedlinePlus Genetics, US National Library of Medicine, 2013-04-01
  5. Severe combined immunodeficiency (SCID)
    Immune Deficiency Foundation, Accessed 2026-09-24
  6. EBMT/ESID inborn errors working party guidelines for hematopoietic stem cell transplantation for inborn errors of immunity
    EBMT / ESID Inborn Errors Working Party, Bone Marrow Transplantation, 2021-07-05
  7. Measuring the effect of newborn screening on survival after haematopoietic cell transplantation for severe combined immunodeficiency: a 36-year longitudinal study
    Primary Immune Deficiency Treatment Consortium, The Lancet, 2023-06-20
  8. Severe combined immunodeficiency (SCID)
    Children’s Hospital of Philadelphia, Page undated; accessed 2026-09-24
  9. Transplantation outcomes for severe combined immunodeficiency, 2000–2009
    Primary Immune Deficiency Treatment Consortium, New England Journal of Medicine, 2014-07
  10. Newborn screening for severe combined immunodeficiency in 11 screening programs in the United States
    JAMA (Kwan et al.), 2014-08-20
  11. Join the registry
    NMDP, Accessed 2026-09-24
  12. On modeling human leukocyte antigen-identical sibling match probability for allogeneic hematopoietic cell transplantation
    Biology of Blood and Marrow Transplantation, March 2016
  13. Stem Cell and Bone Marrow Transplants for Cancer
    NCI, Accessed 2026-09-24
  14. Allogeneic Hematopoietic Cell Donor Selection: Contemporary Guidelines from the NMDP/CIBMTR
    NMDP / CIBMTR, Transplantation and Cellular Therapy, 2025
  15. What is HLA? HLA basics, typing and matching
    NMDP, Accessed 2026-09-26
  16. Matching with a patient
    NMDP, Accessed 2026-09-26
  17. HCT consultation timing guidelines: Immune deficiency diseases
    NMDP (with ASTCT), Accessed 2026-09-26
  18. Specifications for classification of variants in ADA, DCLRE1C, IL2RG, IL7R, JAK3, RAG1, and RAG2
    Genetics in Medicine (ClinGen SCID Variant Curation Expert Panel), 2025-10-14
  19. Autoimmune manifestations in SCID due to IL7R mutations: Omenn syndrome and cytopenias
    Human Immunology, 2014
  20. Severe combined immunodeficiency (SCID) Treatment
    NMDP, Accessed 2026-09-26
  21. 2024 Recommended Timing for Transplant Consultation
    NMDP and American Society for Transplantation and Cellular Therapy (ASTCT), February 2024; accessed 2026-09-26

This information explains a condition and its treatments. It cannot diagnose an illness or recommend treatment for an individual. Your care team can explain how the evidence applies to you. Written and source-checked by the Jada Bascom Foundation. Each page lists the published sources it draws on.

Ways to help

Someone may be waiting for a match.

Some people with IL7R-deficient SCID are treated with a transplant from a donor. When no relative matches, that donor is often a stranger who joined a registry.

Join the registry

JBF points you to the official registry that serves your country. It explains who can join and what donation involves.

Help someone you love find a donor

If someone you love needs a donor, our family guide explains practical ways to help. A registration drive can add many potential donors at once, for them and for others.

Support this work

Gifts to the Jada Bascom Foundation support donor-awareness education like this page, community outreach, drive planning and referrals to official registries.

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More in the library

Keep learning

Part of Severe combined immunodeficiency (SCID), a guide to how the subtypes fit together.