Inherited immune disorders
IL7R-deficient SCID
Also called IL7R-deficient severe combined immunodeficiency
If you or someone you love has just heard this diagnosis, start here. This guide explains what the condition is, how it is usually treated and where a transplant fits.
IL7R-deficient SCID is an inherited condition in which a baby cannot make T cells, the white blood cells that lead the immune response. It affects girls and boys. Without treatment it is life-threatening in early childhood. A donor stem cell transplant, ideally in the first months of life, is the established treatment.
Other names and abbreviations
IL7R-SCID, IL7RA deficiency, CD127 deficiency, T-B+NK+ SCID, SCID, severe combined immunodeficiency, primary immunodeficiency, T-B+ severe combined immunodeficiency due to IL-7 receptor alpha deficiency, Interleukin-7 receptor alpha deficiency
In short
- IL7R-deficient SCID is an inherited disorder that stops T cells from developing normally. This leaves a child open to serious infections.
- While a transplant is arranged, children may need medicines to prevent infection and treatment for active infections. They may also need antibody (immunoglobulin) support.
- A stem cell transplant can supply cells that grow into working T cells. The donor can be related or unrelated.
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Underlined words open a short explanation. See all terms
Where transplant fits
Allogeneic transplantationComing from another person. In an allogeneic, or donor, transplant, the stem cells come from a relative or an unrelated volunteer whose cells are a close enough match to the patient's. can provide cells that develop into functional T cellsA type of white blood cell that is part of the immune system. T cells grow from stem cells in the bone marrow, help protect the body from infection and may help fight cancer.. A suitable related or unrelated donor may be used; conditioningTreatment that prepares a patient for a stem cell transplant. It can include chemotherapy, radiation or antibody medicines. It makes room in the marrow for the new cells, helps prevent rejection and can kill cancer cells. and the expected pattern of immune recovery depend on the individual case.
Treatment depends on the exact diagnosis, disease stage, prior treatment and the person’s health.
Some patients need a donor who is not a relative.
See if you can joinKey facts
- Who it affects
- Usually detected in infancy or through newborn screening; both sexes can be affected.
- How common
- SCID of any type affects about 1 in 58,000 newborns; 6 of the 52 babies with SCID (about 12%) had IL7R deficiency3,030,083 newborns screened in 10 U.S. states and the Navajo Nation, 2008–2013 Source: How common
- How it is passed on
- Autosomal recessive: a child is affected when both parents pass on a changed gene.
- Cells used in a transplant
- When transplantation is appropriate, the graft contains blood-forming stem cells from a suitable donor. Bone marrow, peripheral blood or cord blood may be selected according to the condition and transplant protocol.
- Where a donor fits
- Donor transplant option
The condition
What it is
SCID stands for severe combined immunodeficiency. It is a group of rare genetic conditions in which a baby is born without a working immune system. IL7R deficiency is the fourth most common type, according to the Immune Deficiency Foundation. It causes about 1 in 10 cases.
Babies with IL7R-deficient SCID have few or no T cells. Unlike some other types, they have normal or even high numbers of B cellsA type of white blood cell that makes antibodies. B cells are part of the immune system and grow from stem cells in the bone marrow. Some lymphomas and leukemias start in B cells., which make antibodiesA protein made by the immune system that sticks to one specific target, such as a germ. Some wrongly target the body's own tissues. Lab-made antibody medicines can target markers such as CD20 or CD38 on some cancer cells., and natural killer (NK) cells, which attack virus-infected cells. Doctors call this pattern T-B+NK+ SCID.
Normal numbers of some immune cells can be misleading. Without T cells to guide them, B cells cannot make useful antibodies, so the baby is still at risk of severe infection. Some changes in the IL7R gene cause a rare, overactive immune state called Omenn syndrome instead of typical SCID.
Marked as affected: T cells.
- Blood stem cell, In the bone marrow
- Myeloid line
- Red blood cells
- Platelets
- Granulocytes
- Monocytes
- Lymphoid line
- B cells
- Plasma cells, Develop from B cells
- T cells, Affected
- NK cells, Natural killer cells
- Myeloid line
What causes it
IL7R-deficient SCID is caused by changes in the IL7R gene. This gene makes one part of the receptor for interleukin 7 (IL-7), a signal that young immune cells need to develop. Without that signal, T cells cannot form normally.
The condition is autosomal recessive. A child is affected only when both copies of the gene have a change, one from each parent. Parents who carry one changed copy usually have no symptoms. When both parents are carriersSomeone with one changed copy of a disease gene who has no symptoms or only mild ones. A carrier can pass the change to a child. A child with a changed copy from each parent usually has the condition., each pregnancy has a 1 in 4 chance of an affected child, a 1 in 2 chance of a carrier child and a 1 in 4 chance of a child with neither change.
Once the family’s gene changes are known, relatives can have carrier testing and a pregnancy can be tested before birth. A genetic counselor can explain what the results mean for brothers, sisters and future children.
- Parent: Carrier: one changed copy, not affected
- Parent: Carrier: one changed copy, not affected
- 1 in 4: Affected, Two changed copies
- 2 in 4: Carrier, One changed copy, like the parents
- 1 in 4: Neither affected nor a carrier, Two working copies
The chances are the same for each pregnancy.
A child is affected after inheriting a changed copy of the gene from each parent.
- Changed copy of the gene
- Working copy
Symptoms and effects
Babies look healthy at birth. Without treatment, symptoms start in infancy. They include infections that keep coming back, fever, ongoing diarrhea, skin inflammation and poor weight gain and growth.
In the United States, newborn screeningTests for serious conditions, often done before a newborn baby leaves the hospital. Some use a few drops of blood from the baby's heel. If a result points to a condition, more tests check for it. for SCID reached every state by the end of 2018. A heel-prick blood test called TREC checks for signs that the baby is making new T cells, so babies with IL7R-deficient SCID can be found before they get sick. Where screening is not available, the condition is usually found only after serious infections begin.
An abnormal screen is not a diagnosis, but it needs urgent attention from an immunology team. Blood tests count each kind of immune cell, and genetic testing confirms the cause. Speed matters: in a large study in the United States and Canada, babies who had an active infection when they were transplanted were less likely to survive.
Diagnosis and treatment
How IL7R-deficient SCID is diagnosed
In the United States, most babies with SCID, including this type, are now flagged by newborn screening. The TREC heel-prick test looks for signs that a baby is making new T cells. IL7R is one of the 7 genes most often found behind SCID picked up by screening in North America. An abnormal screen leads to an urgent visit with an immunology team.
Blood tests confirm SCID. Flow cytometry, a test that sorts and counts cells, measures T cells, B cells and natural killer (NK) cells. Another blood test checks whether the T cells work. In IL7R-deficient SCID, T cells are very low or missing, while B cells and NK cells are present, often in normal numbers: the T-B+NK+ pattern. Changes in several other genes can cause the same pattern, so a genetic test is needed.
The genetic test looks for a change in both copies of the IL7R gene. Results can take weeks or months, so steps to protect the baby from germs start right away. Doctors sometimes repeat the cell counts over time to watch for trends.
Low T cells on a newborn screen can have causes other than SCID, so follow-up tests are needed to confirm the diagnosis.
How it is treated
From the moment SCID is suspected, the goal is to keep the baby free of infection until a lasting treatment. Care usually includes medicines to prevent infections, including a dangerous pneumonia called Pneumocystis pneumonia, and regular antibody replacement called immunoglobulin, made from donated plasma. Babies with SCID are not given live vaccines, such as the rotavirus vaccine, and any blood they receive is first treated with radiation and chosen to be free of CMV, a common virus. Breastfeeding is discussed with the team, because breast milk can pass on CMV.
A donor stem cell transplantA treatment that gives a patient healthy blood-forming stem cells through a vein. The cells travel to the bone marrow and replace faulty marrow or marrow damaged by treatment. They can come from the patient or a donor. is the established treatment. The donor’s blood-forming stem cellsYoung cells that can grow into every type of blood cell: red cells that carry oxygen, white cells that fight infection and platelets that help blood clot. They are found in the bone marrow and the bloodstream. settle in the child and make new T cells, giving the child a working immune system. Results are best when the transplant happens early, before serious infections.
In this type of SCID, the gene change does not directly affect the child’s own B cells. Once donor T cells are in place, those B cells may be able to make useful antibodies. Even so, the team decides case by case whether to give conditioning first: donor cells that also settle in the marrowThe soft, spongy tissue in the center of most bones. Red bone marrow holds the blood-forming stem cells that make red blood cells, white blood cells and platelets. may give more complete, longer-lasting immunity, but conditioning adds side effects now and possible effects on growth, hormones and organs later. There is no approved gene therapyTreatment that adds a new gene or restores the work of a faulty or missing one. For some inherited disorders, the patient's own blood-forming stem cells are changed in a lab and given back. It does not use a donor. for IL7R-deficient SCID.
About these numbers. Each one says which group of people it comes from, and the place and years where the source gives them. It describes what happened across that group, not what will happen to any one person. And a figure measured among people who had a transplant is not the same as the number of people who need one.
- 92.5%5-year survival after transplant for babies found by newborn screening
Children with any type of SCID (not IL7R deficiency alone) who were identified by newborn screening and transplanted in 2010–2018 at 34 centers in the United States and Canada
Read the source: 5-year survival after transplant for babies found by newborn screening
Kinds of treatment described for IL7R-deficient SCID: supportive care and a donor stem cell transplant.
After diagnosis, the options described here
Supportive care
Medicines to prevent infection and antibody support protect the baby while a transplant is arranged.
Donor stem cell transplant
A donor stem cell transplant is the established treatment, with the best results when it happens early.
What a transplant involves
These are the kinds of treatment this page describes, not a plan. Which ones fit, in what order and whether they are combined differs from person to person.
When transplant specialists are usually consulted
NMDP and ASTCT guidelines call for a transplant consultation for SCID at diagnosis, or as soon as newborn screening finds it. If a donor transplant may be needed, they advise HLA typingA lab test that finds a person's tissue type (HLA markers). It starts with a blood draw or a cheek swab. Doctors compare a patient's results with those of relatives, registry donors and cord blood units. of the baby and family, and a first search of the NMDP Registry, at diagnosis.
Read the guidanceWhat a transplant involves
- Step 1
: Finding a donor
Relatives are tested first to see whether their tissue type (HLA) matches. If none match, the team searches donor registries and cord blood banks.
- Step 2
: Conditioning
Chemotherapy, sometimes with radiation, prepares the body for the new cells.
- Step 3
: Transplant day, Day 0
The donor’s cells are given through a vein, like a transfusion.
- Step 4
: Engraftment
The new cells settle in the marrow and start making blood cells, usually within weeks.
- Step 5
: Recovery
The immune system rebuilds over months. The team watches for infection, graft-versus-host disease (donor immune cells attacking the body) and relapse.
Daily life and the donor’s role
Living with the condition
The weeks between diagnosis and transplant can be frightening. Families are usually asked to keep the baby at home or in hospital, away from crowds, daycare and anyone who is sick, even with a cold. Brothers and sisters who go to school or daycare can bring germs home, so daily routines often change for the whole family.
Treatment means a stay at a specialist children’s hospital, sometimes far from home. Afterward, checkups continue for years to see how well the donor cells have taken hold and how the child is growing. Preventive medicines and antibody replacement are stopped only when the new immune system is working well. Vaccines are given after that, on the team’s schedule.
Because the condition is recessive, parents may also face decisions about testing their other children and planning future pregnancies. Talking with other SCID families, a genetic counselor and the hospital’s social workers can help with the stress, the isolation and the practical costs.
The donor’s role
A transplant for IL7R-deficient SCID uses blood-forming stem cells from a donor. A brother or sister who is a full HLA matchMarkers on most cells that make up a person's tissue type. Doctors test a patient's and donor's HLA to see how well they match. The more markers they share, the better the chance the body accepts the donor's cells. is the first choice. But each full sibling has only about a 1 in 4 chance of being a match, and siblings are also checked to make sure they do not have the condition themselves. Many children do not have a matched sibling.
Without one, teams look for a fully matched unrelated donor through the registries. If that search would take too long for the baby’s safety, or no match exists, a half-matchedHalf-matched. A haploidentical donor's tissue type (HLA) matches about half of the patient's. It may be a parent, child, brother or sister. Care teams may use one when a fully or closely matched donor is not available. family member, usually a parent (a haploidentical donor), or a cord blood unitOne donated collection of cord blood. If it holds enough blood-forming stem cells, it is frozen and stored until a patient needs it. It is listed on a registry so patients searching for a match can find it. is used instead. In a large study in the United States and Canada, survival was high with every donor type when babies were transplanted young or before infections set in.
This is why registry volunteers matter for SCID, and why speed matters. A matched volunteer who is ready to donate quickly can make an unrelated transplant possible while a baby waits in protective isolation. Joining a registry cannot promise a match for any one child, and many children are treated with a parent’s cells instead.
Highlighted here: a relative, an unrelated volunteer and donated cord blood.
The person’s own cells
Autologous transplant, no donor
Collected from the person before treatment, then given back.
A relative
Donor transplant (allogeneic)
A brother or sister may be a full match. Parents and children can be half-matched donors.
An unrelated volunteer
Donor transplant (allogeneic)
Found through a donor registry.
Donated cord blood
Donor transplant (allogeneic)
Collected from a baby’s umbilical cord after birth and stored in a public bank.
Some patients rely on a volunteer donor they have never met. Joining your country’s registry could make you that person for someone.
Join the registryFinding a donor and the outlook
How a donor is found
When a transplant from a donor is planned, the team usually tests brothers and sisters first. Each full sibling has about a one in four chance of being a full match.
Most patients do not have a matched relative. In the words of NMDP, the U.S. registry, “75% of patients don’t have a fully matched donor in their own family.” The team then searches registries of volunteer donors around the world and banks of donated cord blood. In some transplants, a half-matched parent, child or sibling can also be the donor.
8 of 8
All eight markers match. Doctors call this a full match.
8 of 8: the donor matches the patient at all eight markers, two each for HLA-A, HLA-B, HLA-C and HLA-DRB1.
7 of 8
One marker differs. Some transplants use a donor like this.
7 of 8: the donor matches at seven of the eight markers. One HLA-C marker differs.
Half-matched
One set, inherited together from one parent, matches. The rest may or may not.
Half-matched: the donor matches the four markers the patient inherited from one parent. The other four may or may not match.
- Matches
- Differs
- May or may not match
- Top row: from one parent. Bottom row: from the other.
- DR means HLA-DRB1
Doctors can look at up to 12 HLA markers, and usually aim to match 8 to 10 of them. This drawing shows the 8 that transplant guidelines count, and it reads each one as simply matching or not.
Matching depends on inherited tissue markers called HLA, so a patient is most likely to match someone who shares their ancestry. Every person who joins makes the search a little more likely to succeed, especially for patients from groups that are underrepresented on registries.
Looking ahead
Outlook for IL7R-deficient SCID
Without a transplant, IL7R-deficient SCID is life-threatening. With early treatment, most children now survive. In large North American studies of SCID, two things mattered a great deal: how young the baby was at transplant and whether the baby had an active infection at the time.
Survival also differs by type of SCID. In a study of 902 children with SCID at 34 centers in the United States and Canada, survival in the group that included IL7R deficiency (along with CD3 and CD45 types) was not clearly different from the X-linked group. Some other types, such as ADA deficiency and the DNA-repair types, had lower survival.
Follow-up is lifelong. Regular blood tests check that the new immune system stays healthy.
About these numbers. They describe groups of people, not what will happen to any one person.
- 6 of 6Babies with IL7R SCID found by newborn screening who were alive with donor cells in place
All 6 infants with IL7R-deficient SCID found by newborn screening in 10 U.S. states and the Navajo Nation, 2008–2013, all transplanted and followed to age 11 months or older; a very small group
Read the source: Babies with IL7R SCID found by newborn screening who were alive with donor cells in place - 94%Alive five years after transplant at age 3.5 months or younger
240 infants with any type of SCID (not IL7R deficiency alone) transplanted 2000–2009 at 25 centers in the United States and Canada, any donor type; published 2014
Read the source: Alive five years after transplant at age 3.5 months or younger - 90%Alive five years after transplant, older babies with no infection
Infants with any type of SCID (not IL7R deficiency alone) older than 3.5 months at transplant and with no prior infection, transplanted 2000–2009 at 25 centers in the United States and Canada, any donor type; published 2014
Read the source: Alive five years after transplant, older babies with no infection
These are results for groups of treated children. They cannot predict how one child will do.
Common questions
Is IL7R-deficient SCID curable?
Often, yes. NMDP calls transplant the only known cure for SCID. Donor stem cells grow into working T cells and give the child a working immune system. Results are best when the baby is transplanted young and before serious infections. In one U.S. newborn screening study, all six babies found with IL7R SCID were alive with donor cells in place at follow-up. There is no FDA-approved gene therapy for any form of SCID.
What does T-B+NK+ SCID mean?
It describes which immune cells a baby has. T cells are missing (T-), while B cells (B+) and natural killer cells (NK+) are present. IL7R deficiency is one cause of this pattern. Changes in a few other genes, such as those for parts of the CD3 complex or for CD45, can cause it too. Having B cells is not enough for protection, because B cells need T cells to make useful antibodies.
How is IL7R-deficient SCID inherited?
It is autosomal recessive. A child is affected when both copies of the IL7R gene have a change, one from each parent. Parents who carry one changed copy are usually healthy. When both parents are carriers, each pregnancy has a 1 in 4 chance of an affected child. Unlike X-linked SCID, both girls and boys can be affected. Once the family's changes are known, relatives can have carrier testing.
Does newborn screening find IL7R-deficient SCID?
Yes, usually. The TREC newborn screen looks for signs that a baby is making new T cells, and babies with IL7R SCID make very few. Every U.S. state screens for SCID. A positive screen is not a diagnosis. It leads to urgent blood tests and genetic testing to confirm the type. In places without screening, babies are often found only after serious infections begin, which makes transplant riskier.
Does a baby with IL7R SCID need chemotherapy before transplant?
Not always. The team decides case by case. European transplant guidelines note that B cells are not directly affected in this type of SCID. So donor cells may not need to settle in the marrow for the child's own B cells to work. A transplant without conditioning (medicines that clear space in the marrow) is possible. The same guidelines note that when donor cells do settle in the marrow, overall immune function may be better in the long run.
Why the details matter
A standard SCID transplant plan does not suit every genetic type of SCID, so the approach is chosen with the gene in mind.
For your next appointment
IL7R-deficient SCID
From the Jada Bascom Foundation disease library, jadabascomfoundation.org. Printed .
Questions to bring to your care team
- Has genetic testing confirmed changes in both copies of IL7R, and is this typical SCID or Omenn syndrome?
- Should our other children be tested, and can a brother or sister who carries one changed copy be a donor?
- Do you plan conditioning before transplant, and what long-term effects should we watch for?
- How long might an unrelated-donor search take, and what is the plan if no matched volunteer is found in time?
- What is the goal of each treatment you are suggesting?
- Is a transplant being considered? Why now, or why not yet?
- Where can our family find support during treatment?
A one-page list to take to the next appointment, with room for notes.
Supporting someone with a diagnosisSupport for patients and families
These independent organizations offer information and support. JBF is not affiliated with them.
- SCID Foundation Shares SCID information, hosts an online family community, and offers Path Forward Scholarships to U.S. families during SCID treatment.United States
- Immune Deficiency Foundation Explains SCID types, including IL7R deficiency, and works to improve diagnosis, treatment and quality of life for people with primary immunodeficiency.United States
- International Patient Organisation for Primary Immunodeficiencies (IPOPI) International association of national patient groups for primary immunodeficiency, working to improve patients' lives and earlier diagnosis worldwide.Worldwide
Sources and further reading
- Guidelines for hematopoietic stem cell transplantation for inborn errors of immunity
EBMT / ESID Inborn Errors Working Party, 2021 - Inborn Errors of Immunity
EBMT Handbook, 2024-04-11 - T-B+ severe combined immunodeficiency due to IL-7Ralpha deficiency
NIH Genetic and Rare Diseases Information Center (GARD), 2026-06 - IL7R gene
MedlinePlus Genetics, US National Library of Medicine, 2013-04-01 - Severe combined immunodeficiency (SCID)
Immune Deficiency Foundation, Accessed 2026-09-24 - EBMT/ESID inborn errors working party guidelines for hematopoietic stem cell transplantation for inborn errors of immunity
EBMT / ESID Inborn Errors Working Party, Bone Marrow Transplantation, 2021-07-05 - Measuring the effect of newborn screening on survival after haematopoietic cell transplantation for severe combined immunodeficiency: a 36-year longitudinal study
Primary Immune Deficiency Treatment Consortium, The Lancet, 2023-06-20 - Severe combined immunodeficiency (SCID)
Children’s Hospital of Philadelphia, Page undated; accessed 2026-09-24 - Transplantation outcomes for severe combined immunodeficiency, 2000–2009
Primary Immune Deficiency Treatment Consortium, New England Journal of Medicine, 2014-07 - Newborn screening for severe combined immunodeficiency in 11 screening programs in the United States
JAMA (Kwan et al.), 2014-08-20 - Join the registry
NMDP, Accessed 2026-09-24 - On modeling human leukocyte antigen-identical sibling match probability for allogeneic hematopoietic cell transplantation
Biology of Blood and Marrow Transplantation, March 2016 - Stem Cell and Bone Marrow Transplants for Cancer
NCI, Accessed 2026-09-24 - Allogeneic Hematopoietic Cell Donor Selection: Contemporary Guidelines from the NMDP/CIBMTR
NMDP / CIBMTR, Transplantation and Cellular Therapy, 2025 - What is HLA? HLA basics, typing and matching
NMDP, Accessed 2026-09-26 - Matching with a patient
NMDP, Accessed 2026-09-26 - HCT consultation timing guidelines: Immune deficiency diseases
NMDP (with ASTCT), Accessed 2026-09-26 - Specifications for classification of variants in ADA, DCLRE1C, IL2RG, IL7R, JAK3, RAG1, and RAG2
Genetics in Medicine (ClinGen SCID Variant Curation Expert Panel), 2025-10-14 - Autoimmune manifestations in SCID due to IL7R mutations: Omenn syndrome and cytopenias
Human Immunology, 2014 - Severe combined immunodeficiency (SCID) Treatment
NMDP, Accessed 2026-09-26 - 2024 Recommended Timing for Transplant Consultation
NMDP and American Society for Transplantation and Cellular Therapy (ASTCT), February 2024; accessed 2026-09-26
This information explains a condition and its treatments. It cannot diagnose an illness or recommend treatment for an individual. Your care team can explain how the evidence applies to you. Written and source-checked by the Jada Bascom Foundation. Each page lists the published sources it draws on.
Ways to help
Someone may be waiting for a match.
Some people with IL7R-deficient SCID are treated with a transplant from a donor. When no relative matches, that donor is often a stranger who joined a registry.
Join the registry
JBF points you to the official registry that serves your country. It explains who can join and what donation involves.
Help someone you love find a donor
If someone you love needs a donor, our family guide explains practical ways to help. A registration drive can add many potential donors at once, for them and for others.
Support this work
Gifts to the Jada Bascom Foundation support donor-awareness education like this page, community outreach, drive planning and referrals to official registries.
More in the library
Keep learning
Part of Severe combined immunodeficiency (SCID), a guide to how the subtypes fit together.

