Inherited immune disorders
CD40 ligand deficiency (X-linked hyper-IgM syndrome)
If you or someone you love has just heard this diagnosis, start here. This guide explains what the condition is, how it is usually treated and where a transplant fits.
CD40 ligand deficiency, also called X-linked hyper-IgM syndrome, is a rare inherited immune disorder that mostly affects boys. The body cannot make most kinds of protective antibodies, and serious lung, gut and liver infections can follow. Antibody replacement and infection prevention help, and a donor stem cell transplant is currently the only treatment that can correct the immune defect.
Other names and abbreviations
CD40LG deficiency, CD40L deficiency, HIGM1, XHIGM, XHIM, CD154 deficiency, hyper IgM syndrome, primary immunodeficiency, PID, X-linked hyper-IgM syndrome, Hyper-IgM syndrome type 1
In short
- CD40 ligand deficiency is an inherited immune disorder, usually found in boys. Immune cells have trouble working together and making antibodies.
- Care can include antibody (immunoglobulin) replacement and medicines to prevent and treat infections. It can also include treatment for low counts of certain white blood cells.
- A stem cell transplant can correct the immune problem. An unrelated registry donor is an option when no suitable family donor is available.
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Underlined words open a short explanation. See all terms
Where transplant fits
Allogeneic transplantationComing from another person. In an allogeneic, or donor, transplant, the stem cells come from a relative or an unrelated volunteer whose cells are a close enough match to the patient's. can correct the immune defect. A suitable unrelated donor is an option when an appropriate family donor is unavailable. Timing depends on infection history, organ health and transplantA treatment that gives a patient healthy blood-forming stem cells through a vein. The cells travel to the bone marrow and replace faulty marrow or marrow damaged by treatment. They can come from the patient or a donor. risk.
Treatment depends on the exact diagnosis, disease stage, prior treatment and the person’s health.
Some patients need a donor who is not a relative.
See if you can joinKey facts
- Who it affects
- Usually recognized in boys during childhood, although milder or later presentations occur.
- How common
- About 2 in every 1 million newborn boysEstimate for X-linked hyper-IgM syndrome in newborn boys, from MedlinePlus Genetics (U.S. National Library of Medicine), page updated February 2023; region not specified Source: How common
- How it is passed on
- X-linked: the changed gene is on the X chromosome, so it mostly affects boys.
- Cells used in a transplant
- When transplantation is appropriate, the graft contains blood-forming stem cells from a suitable donor. Bone marrow, peripheral blood or cord blood may be selected according to the condition and transplant protocol.
- Where a donor fits
- Donor transplant option
The condition
What it is
CD40 ligand is a protein on the surface of T cellsA type of white blood cell that is part of the immune system. T cells grow from stem cells in the bone marrow, help protect the body from infection and may help fight cancer., the white blood cells that direct an immune response. T cells use it to “talk” to B cellsA type of white blood cell that makes antibodies. B cells are part of the immune system and grow from stem cells in the bone marrow. Some lymphomas and leukemias start in B cells., the cells that make antibodiesA protein made by the immune system that sticks to one specific target, such as a germ. Some wrongly target the body's own tissues. Lab-made antibody medicines can target markers such as CD20 or CD38 on some cancer cells., and to other germ-fighting cells. When CD40 ligand is missing or does not work, that conversation breaks down.
B cells can still make IgM, the first antibody the body produces. But they cannot switch to IgG, IgA and IgE, the longer-lasting antibodies that protect against most germs. Blood tests usually show low IgG and IgA with normal or high IgM, which is where the name hyper-IgM comes from.
Doctors confirm the diagnosis with a genetic test that finds a change in the CD40LG gene. Many places screen newborns for severe combined immunodeficiency (SCID) by looking for babies who make very few new T cells. Boys with CD40 ligand deficiency usually have normal numbers of T cells, B cells and natural killer cells, so that screen is not expected to find them.
Marked as affected: B cells and T cells.
- Blood stem cell, In the bone marrow
- Myeloid line
- Red blood cells
- Platelets
- Granulocytes
- Monocytes
- Lymphoid line
- B cells, Affected
- Plasma cells, Develop from B cells
- T cells, Affected
- NK cells, Natural killer cells
- Myeloid line
What causes it
The condition is caused by a change in the CD40LG gene, which sits on the X chromosome. Boys have one X chromosome, so one changed copy is enough to cause the condition. Girls have two, and a girl with one changed copy usually has no symptoms, although some do have signs of the condition.
A mother who carries the change has a 50% chance of passing it on in each pregnancy. Sons who inherit it are affected, and daughters who inherit it are carriersSomeone with one changed copy of a disease gene who has no symptoms or only mild ones. A carrier can pass the change to a child. A child with a changed copy from each parent usually has the condition.. Sometimes the change is new in the child. A genetic counselor can explain what a result means for the family, and newborn boys in a family with a known change can be tested early.
It is very rare. Published estimates are roughly one to two cases for every million boys. It cannot be caught from another person.
- Mother: Carrier: one changed copy on an X chromosome
- Father: Not affected
- 1 in 2: Affected, Inherits his mother’s changed X
- 1 in 2: Not affected, Inherits his mother’s working X
- 1 in 2: Carrier, Inherits her mother’s changed X
- 1 in 2: Not a carrier, Two working copies
Mostly affects boys. Girls can be carriers and are sometimes affected.
The chances are the same for each pregnancy.
The gene is on the X chromosome, so the condition is usually seen in boys.
- Changed copy of the gene
- Working copy
- Y chromosome, with no copy of this gene
Symptoms and effects
Symptoms usually begin in infancy. More than half of affected boys have symptoms by age 1, and more than 90% by age 4. Repeated ear, sinus and lung infections are common, and a serious lung infection called Pneumocystis pneumonia is often the first sign.
Many boys have long-lasting diarrhea and trouble gaining weight. About half of boys have neutropenia, a low count of infection-fighting white blood cells called neutrophilsA type of white blood cell that is one of the first to respond to germs such as bacteria. Low neutrophil levels raise the risk of serious infection., which adds to the risk of infection. A parasite called Cryptosporidium, spread through water, can infect the gut and bile ducts. Over time it can lead to sclerosing cholangitis, a scarring of the bile ducts that damages the liver.
Liver and bile duct disease is one of the most serious long-term problems and is linked with shorter survival. The condition also raises the risk of some cancers, including cancers of the liver, bile ducts and gut, and lymphoma. A smaller number of boys have serious brain infections or autoimmune problems.
A simple drawing of a body. Often affected: airway and lungs. Can also be affected: brain and spinal cord, liver and stomach and bowel.
Often affected
- Airway and lungs: Pneumocystis pneumonia is often the first sign
Can also be affected
- Brain and spinal cord
- Liver: scarring of the bile ducts
- Stomach and bowel
This shows the parts of the body the condition can affect. Most people have only some of these, and the drawing says nothing about how severe any of them will be.
Diagnosis and treatment
How CD40 ligand deficiency is diagnosed
Doctors usually suspect it in a boy with Pneumocystis pneumonia, long-lasting diarrhea from Cryptosporidium, repeated ear, sinus and chest infections, or low neutrophil counts. In a study of 176 patients, the median age at diagnosis was 1 year. Some people were not diagnosed until adulthood.
Blood tests come first. They usually show low IgG and IgA with normal or high IgM, while counts of T cells, B cells and natural killer cells are normal. A flow cytometry test then checks whether T cells put CD40 ligand on their surface after they are switched on in the lab. This is a helpful clue but not proof. Some gene changes still let the protein show up on this test, so a normal result does not rule the condition out. Babies younger than 6 months may not make normal amounts yet.
The genetic test that confirms it may look at the CD40LG gene alone or at a panel of immune genes. Once the family's gene change is known, newborn boys in the family can be tested right away, so treatment and infection prevention can start early. Women in the family can learn whether they carry it. Testing during pregnancy, or testing of embryos before pregnancy (preimplantation testing), also becomes possible.
Other, rarer forms of hyper-IgM syndrome are caused by different genes and can look the same on blood tests, which is one reason genetic testing matters.
How it is treated
Most boys receive immunoglobulin replacement, which supplies the IgG antibodies their bodies cannot make. It is given into a vein or under the skin, starting at diagnosis. Antibiotics to prevent Pneumocystis pneumonia are common, and G-CSF injections may be used for low neutrophil counts.
Families are usually taught how to lower the risk of Cryptosporidium, such as drinking only purified or filtered water and avoiding pools, lakes and ponds. Live vaccines, including rotavirus, MMR, chickenpox and BCG, are avoided. Regular checks watch blood counts, lungs and liver, and test stool for Cryptosporidium.
A stem cell transplant is currently the only treatment that can correct the immune defect. Results are best when it is done before age 10 and before the liver or lungs are damaged. Scarring of the bile ducts before transplant makes it riskier. No gene therapyTreatment that adds a new gene or restores the work of a faulty or missing one. For some inherited disorders, the patient's own blood-forming stem cells are changed in a lab and given back. It does not use a donor. is approved. A gene-editing approach is being studied at the US National Institutes of Health in a single-patient study that opened in 2025.
About these numbers. Each one says which group of people it comes from, and the place and years where the source gives them. It describes what happened across that group, not what will happen to any one person. And a figure measured among people who had a transplant is not the same as the number of people who need one.
- 78%Alive five years after transplant
130 patients transplanted for CD40 ligand deficiency between 1993 and 2015 at international centers (EBMT/ESID and North American PIDTC study, published 2019). Results were better for transplants from 2000 on and in children under 10.
Read the source: Alive five years after transplant
Transplant has real risks, and the evidence is still being weighed. A study of 176 patients diagnosed between 1964 and 2013, reported by 28 centers in North America, Europe, South America and elsewhere, found no overall survival difference between those who had a transplant and those who did not. Transplant risks fell over time, and survivors who had a transplant had somewhat better day-to-day well-being. Care teams weigh this for each child.
Kinds of treatment described for CD40 ligand deficiency (X-linked hyper-IgM syndrome): supportive care and a donor stem cell transplant (for some people).
After diagnosis, the options described here
Supportive care
Immunoglobulin replacement, medicines to prevent infection and safe-water habits help protect against infections.
Donor stem cell transplant, For some people
A stem cell transplant is currently the only treatment that can correct the immune defect, with the best results before liver or lung damage.
What a transplant involves
These are the kinds of treatment this page describes, not a plan. Which ones fit, in what order and whether they are combined differs from person to person.
When transplant specialists are usually consulted
In a large international study, transplants done within 2 years of diagnosis, in children under 10, and before organ damage had better results. That is why the timing of a transplant referral matters.
Read the guidanceWhat a transplant involves
- Step 1
: Finding a donor
Relatives are tested first to see whether their tissue type (HLA) matches. If none match, the team searches donor registries and cord blood banks.
- Step 2
: Conditioning
Chemotherapy, sometimes with radiation, prepares the body for the new cells.
- Step 3
: Transplant day, Day 0
The donor’s cells are given through a vein, like a transfusion.
- Step 4
: Engraftment
The new cells settle in the marrow and start making blood cells, usually within weeks.
- Step 5
: Recovery
The immune system rebuilds over months. The team watches for infection, graft-versus-host disease (donor immune cells attacking the body) and relapse.
Daily life and the donor’s role
Living with the condition
Life with CD40 ligand deficiency often means regular immunoglobulin treatments, daily medicines and frequent checkups. Families plan around safe water at home, at school and when traveling. A fever, cough or diarrhea that will not go away may need fast medical attention.
Deciding whether and when to have a transplant is a big choice. The team weighs infection history, liver and lung health, age and available donors. A transplant means conditioning treatmentTreatment that prepares a patient for a stem cell transplant. It can include chemotherapy, radiation or antibody medicines. It makes room in the marrow for the new cells, helps prevent rejection and can kill cancer cells., weeks in the hospital and months of close follow-up for infection, graft failureWhen donor stem cells never start making enough blood cells after a transplant, or start and then stop. Blood counts stay low or fall. It has many possible causes. An immune attack on the new cells (graft rejection) is one. and graft-versus-host diseaseA complication of a donor transplant. The donated cells see the patient's healthy tissues as foreign and attack them, especially the skin, liver and gut. It can start soon after transplant or much later and can be life-threatening.. In one large study, about a third of people still needed immunoglobulin five years after transplant.
Mothers and sisters may want genetic counseling to learn whether they carry the change. Hyper-IgM and primary immunodeficiency patient groups can connect families with others who understand.
The donor’s role
A transplant needs healthy blood-forming stem cellsYoung cells that can grow into every type of blood cell: red cells that carry oxygen, white cells that fight infection and platelets that help blood clot. They are found in the bone marrow and the bloodstream. from a donor whose HLAMarkers on most cells that make up a person's tissue type. Doctors test a patient's and donor's HLA to see how well they match. The more markers they share, the better the chance the body accepts the donor's cells. tissue type closely matches the patient. A matched brother or sister is often the first choice, but family members are checked first to make sure they do not have the family’s gene change. Many boys have no matched sibling.
When there is no suitable family match, a matched unrelated donor from a registry is an established option. Partly matched (haploidenticalHalf-matched. A haploidentical donor's tissue type (HLA) matches about half of the patient's. It may be a parent, child, brother or sister. Care teams may use one when a fully or closely matched donor is not available.) family donors and cord bloodBlood collected from a newborn baby's umbilical cord after birth. It contains many blood-forming stem cells, so donated cord blood can be used for a stem cell transplant. are also used, mainly at centers with experience in these transplants. In the large international study, transplants from 2000 on did better with matched donors, which is one reason a full-match search matters.
Timing can make the search urgent. Results are better before the liver or lungs are damaged, so teams often begin looking for a donor soon after diagnosis. Joining a registry cannot promise a match for any one child, but more volunteers of every background widen the choices.
Highlighted here: a relative, an unrelated volunteer and donated cord blood.
The person’s own cells
Autologous transplant, no donor
Collected from the person before treatment, then given back.
A relative
Donor transplant (allogeneic)
A brother or sister may be a full match. Parents and children can be half-matched donors.
An unrelated volunteer
Donor transplant (allogeneic)
Found through a donor registry.
Donated cord blood
Donor transplant (allogeneic)
Collected from a baby’s umbilical cord after birth and stored in a public bank.
Some patients rely on a volunteer donor they have never met. Joining your country’s registry could make you that person for someone.
Join the registryFinding a donor and the outlook
How a donor is found
When a transplant from a donor is planned, the team usually tests brothers and sisters first. Each full sibling has about a one in four chance of being a full match.
Most patients do not have a matched relative. In the words of NMDP, the U.S. registry, “75% of patients don’t have a fully matched donor in their own family.” The team then searches registries of volunteer donors around the world and banks of donated cord blood. In some transplants, a half-matched parent, child or sibling can also be the donor.
8 of 8
All eight markers match. Doctors call this a full match.
8 of 8: the donor matches the patient at all eight markers, two each for HLA-A, HLA-B, HLA-C and HLA-DRB1.
7 of 8
One marker differs. Some transplants use a donor like this.
7 of 8: the donor matches at seven of the eight markers. One HLA-C marker differs.
Half-matched
One set, inherited together from one parent, matches. The rest may or may not.
Half-matched: the donor matches the four markers the patient inherited from one parent. The other four may or may not match.
- Matches
- Differs
- May or may not match
- Top row: from one parent. Bottom row: from the other.
- DR means HLA-DRB1
Doctors can look at up to 12 HLA markers, and usually aim to match 8 to 10 of them. This drawing shows the 8 that transplant guidelines count, and it reads each one as simply matching or not.
Matching depends on inherited tissue markers called HLA, so a patient is most likely to match someone who shares their ancestry. Every person who joins makes the search a little more likely to succeed, especially for patients from groups that are underrepresented on registries.
Looking ahead
Outlook for CD40 ligand deficiency
CD40 ligand deficiency is a serious, lifelong condition, and how it goes differs a lot from one boy to the next. Pneumocystis pneumonia in infancy, liver disease, and cancers in the teen or young adult years are important causes of death. Liver disease was once seen in more than 80% of affected boys by age 20. With better screening and treatment of Cryptosporidium, that number may now be lower.
A long-term study followed 176 people diagnosed between 1964 and 2013, with and without a transplant. Half were still alive 25 years after diagnosis. Of the problems present at diagnosis, only liver or bile duct disease was linked with shorter survival. For boys who have a donor transplant, results are best when it is done before age 10 and before organ damage.
These numbers come from people diagnosed over five decades, and they cannot predict how any one child will do. Early diagnosis, safe water, regular liver and stool checks, and a timely decision about transplant are what care teams focus on.
About these numbers. They describe groups of people, not what will happen to any one person.
- 25 yearsMedian survival after diagnosis
176 people with X-linked hyper-IgM syndrome diagnosed between 1964 and 2013 and reported by 28 clinical sites (half in North America, the rest mainly in Europe and South America); includes people treated with and without a transplant (published 2017)
Read the source: Median survival after diagnosis
Median means half of the group lived longer than this and half did not. It is a group figure, not a forecast for one person.
Common questions
Is hyper IgM syndrome the same as CD40 ligand deficiency?
Not exactly. Hyper-IgM syndrome is a group of inherited immune disorders. In all of them, the body makes normal or high levels of the antibody IgM but little IgG. CD40 ligand deficiency is the most common form, making up nearly 3 in 4 cases, and because it is X-linked it mostly affects boys. Other forms include CD40 deficiency, which looks almost the same but is inherited from both parents, and AID or UNG deficiency, which mainly affect how B cells make antibodies. Genetic testing tells them apart.
What is the life expectancy with X-linked hyper IgM syndrome?
It varies a lot. Liver disease is a strong warning sign. Pneumocystis pneumonia in infancy, liver disease, and cancer in the teen or young adult years are important causes of death. A donor stem cell transplant can cure the immune problem. In an international study of 130 people transplanted from 1993 to 2015, 78% were alive five years later. The outlook section on this page gives survival for everyone with the condition. Group numbers cannot predict one child's future.
Can a girl have X-linked hyper IgM syndrome?
It is extremely rare. Girls have two X chromosomes, so a girl with one changed CD40LG gene usually has no symptoms. She is a carrier. In rare cases, the healthy X chromosome is switched off in most of her immune cells (skewed X-inactivation). Then a girl or woman can have symptoms like those of CD40 ligand deficiency or common variable immunodeficiency. A flow cytometry test of activated T cells may help find carriers, and a genetic test for the family's gene change can confirm it.
Is X-linked hyper IgM syndrome curable?
A donor stem cell transplant is the only treatment known to cure it. The transplant replaces the blood-forming cells, so new T cells can make working CD40 ligand. It has serious risks, and teams weigh them against lifelong care with immunoglobulin, medicines to prevent infection and safe-water habits. Results are better when the transplant happens early and before liver or lung damage. No gene therapy is approved. A single-patient gene-editing study opened at the U.S. National Institutes of Health Clinical Center in 2025.
Why do boys with hyper IgM syndrome need to avoid unfiltered water?
Because of a parasite called Cryptosporidium. It can be found in pools, lakes, ponds and water that has not been purified or filtered. In boys with CD40 ligand deficiency, it can cause long-lasting diarrhea. Ongoing infection or inflammation is thought to lead to scarring of the bile ducts (sclerosing cholangitis) and to cancers of the bile ducts or liver. Liver disease was once seen in more than 80% of affected boys by age 20. With better screening and treatment of Cryptosporidium, that number may now be lower.
Why the details matter
This page is about CD40LG deficiency, which is one of several disorders called hyper-IgM syndrome. Organ damage that is already present, especially sclerosing cholangitis (a bile-duct disease), is linked with worse transplant results.
For your next appointment
CD40 ligand deficiency (X-linked hyper-IgM syndrome)
From the Jada Bascom Foundation disease library, jadabascomfoundation.org. Printed .
Questions to bring to your care team
- Should his newborn brothers, and any future sons, be tested for the family's CD40LG change at birth?
- Should his mother and sisters have carrier testing, and what would a positive result mean for them?
- How often will you test his stool for Cryptosporidium and check his liver and bile ducts?
- When would you recommend a transplant, and should his brothers and sisters have HLA typing now?
- What is the exact name of the diagnosis or subtype, and what does it mean for treatment?
- What is the goal of each treatment you are suggesting?
- What happens if a fully matched donor is not found?
- Where can our family find support during treatment?
A one-page list to take to the next appointment, with room for notes.
Supporting someone with a diagnosisSupport for patients and families
These independent organizations offer information and support. JBF is not affiliated with them.
- The Hyper IgM Foundation Nonprofit working to improve treatment, quality of life and long-term outlook for people with hyper IgM, through research, support, education and advocacy.United States
- Immune Deficiency Foundation Explains hyper IgM syndromes in plain language and works to improve diagnosis, treatment and quality of life for people with primary immunodeficiency.United States
- International Patient Organisation for Primary Immunodeficiencies (IPOPI) International association of national patient groups for primary immunodeficiency, working to improve patients' lives and earlier diagnosis worldwide.Worldwide
Sources and further reading
- CD40 Ligand Deficiency
GeneReviews, University of Washington / NCBI Bookshelf, Accessed 2026-09-05 - Guidelines for hematopoietic stem cell transplantation for inborn errors of immunity
EBMT / ESID Inborn Errors Working Party, 2021 - Hematopoietic stem cell transplantation for CD40 ligand deficiency: results from an EBMT/ESID-IEWP-SCETIDE-PIDTC study
Journal of Allergy and Clinical Immunology (Ferrua et al.), 2019-06 - X-linked hyper IgM syndrome
MedlinePlus Genetics, US National Library of Medicine, 2023-02-06 - Long-term outcomes of 176 patients with X-linked hyper-IgM syndrome treated with or without hematopoietic cell transplantation
Journal of Allergy and Clinical Immunology (de la Morena et al.), 2017-04 - Base editing hematopoietic stem cell and T cell gene therapy for CD40L-hyper IgM syndrome: single patient study (NCT06959771)
ClinicalTrials.gov, US National Library of Medicine, Accessed 2026-09-24 - Join the registry
NMDP, Accessed 2026-09-24 - On modeling human leukocyte antigen-identical sibling match probability for allogeneic hematopoietic cell transplantation
Biology of Blood and Marrow Transplantation, March 2016 - Stem Cell and Bone Marrow Transplants for Cancer
NCI, Accessed 2026-09-24 - Allogeneic Hematopoietic Cell Donor Selection: Contemporary Guidelines from the NMDP/CIBMTR
NMDP / CIBMTR, Transplantation and Cellular Therapy, 2025 - What is HLA? HLA basics, typing and matching
NMDP, Accessed 2026-09-26 - Matching with a patient
NMDP, Accessed 2026-09-26 - Hyper IgM syndromes (HIGM)
Immune Deficiency Foundation, Accessed 2026-09-26
This information explains a condition and its treatments. It cannot diagnose an illness or recommend treatment for an individual. Your care team can explain how the evidence applies to you. Written and source-checked by the Jada Bascom Foundation. Each page lists the published sources it draws on.
Ways to help
Someone may be waiting for a match.
Some people with CD40 ligand deficiency (X-linked hyper-IgM syndrome) are treated with a transplant from a donor. When no relative matches, that donor is often a stranger who joined a registry.
Join the registry
JBF points you to the official registry that serves your country. It explains who can join and what donation involves.
Help someone you love find a donor
If someone you love needs a donor, our family guide explains practical ways to help. A registration drive can add many potential donors at once, for them and for others.
Support this work
Gifts to the Jada Bascom Foundation support donor-awareness education like this page, community outreach, drive planning and referrals to official registries.
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